diff --git a/arch/powerpc/platforms/powernv/pci-ioda.c b/arch/powerpc/platforms/powernv/pci-ioda.c
index 062f7fbddccc..74183ff95228 100644
--- a/arch/powerpc/platforms/powernv/pci-ioda.c
+++ b/arch/powerpc/platforms/powernv/pci-ioda.c
@@ -194,14 +194,14 @@ static int pnv_ioda2_init_m64(struct pnv_phb *phb)
 	set_bit(phb->ioda.m64_bar_idx, &phb->ioda.m64_bar_alloc);
 
 	/*
-	 * Strip off the segment used by the reserved PE, which is
-	 * expected to be 0 or last one of PE capability.
+	 * Exclude the segments for reserved and root bus PE, which
+	 * are first or last two PEs.
 	 */
 	r = &phb->hose->mem_resources[1];
 	if (phb->ioda.reserved_pe_idx == 0)
-		r->start += phb->ioda.m64_segsize;
+		r->start += (2 * phb->ioda.m64_segsize);
 	else if (phb->ioda.reserved_pe_idx == (phb->ioda.total_pe_num - 1))
-		r->end -= phb->ioda.m64_segsize;
+		r->end -= (2 * phb->ioda.m64_segsize);
 	else
 		pr_warn("  Cannot strip M64 segment for reserved PE#%d\n",
 			phb->ioda.reserved_pe_idx);
@@ -281,14 +281,14 @@ static int pnv_ioda1_init_m64(struct pnv_phb *phb)
 	}
 
 	/*
-	 * Exclude the segment used by the reserved PE, which
-	 * is expected to be 0 or last supported PE#.
+	 * Exclude the segments for reserved and root bus PE, which
+	 * are first or last two PEs.
 	 */
 	r = &phb->hose->mem_resources[1];
 	if (phb->ioda.reserved_pe_idx == 0)
-		r->start += phb->ioda.m64_segsize;
+		r->start += (2 * phb->ioda.m64_segsize);
 	else if (phb->ioda.reserved_pe_idx == (phb->ioda.total_pe_num - 1))
-		r->end -= phb->ioda.m64_segsize;
+		r->end -= (2 * phb->ioda.m64_segsize);
 	else
 		WARN(1, "Wrong reserved PE#%d on PHB#%d\n",
 		     phb->ioda.reserved_pe_idx, phb->hose->global_number);
@@ -1062,8 +1062,13 @@ static struct pnv_ioda_pe *pnv_ioda_setup_bus_PE(struct pci_bus *bus, bool all)
 		return NULL;
 	}
 
+	/* PE number for root bus should have been reserved */
+	if (pci_is_root_bus(bus) &&
+	    phb->ioda.root_pe_idx != IODA_INVALID_PE)
+		pe = &phb->ioda.pe_array[phb->ioda.root_pe_idx];
+
 	/* Check if PE is determined by M64 */
-	if (phb->pick_m64_pe)
+	if (!pe && phb->pick_m64_pe)
 		pe = phb->pick_m64_pe(bus, all);
 
 	/* The PE number isn't pinned by M64 */
@@ -3226,6 +3231,15 @@ static void pnv_pci_setup_bridge(struct pci_bus *bus, unsigned long type)
 	struct pnv_ioda_pe *pe;
 	bool all = (pci_pcie_type(bridge) == PCI_EXP_TYPE_PCI_BRIDGE);
 
+	/* The PE for root bus should be realized before any one else */
+	if (!phb->ioda.root_pe_populated) {
+		pe = pnv_ioda_setup_bus_PE(phb->hose->bus, false);
+		if (pe) {
+			phb->ioda.root_pe_idx = pe->pe_number;
+			phb->ioda.root_pe_populated = true;
+		}
+	}
+
 	/* Don't assign PE to PCI bus, which doesn't have subordinate devices */
 	if (list_empty(&bus->devices))
 		return;
@@ -3499,7 +3513,22 @@ static void __init pnv_pci_init_ioda_phb(struct device_node *np,
 			phb->ioda.dma32_segmap[segno] = IODA_INVALID_PE;
 	}
 	phb->ioda.pe_array = aux + pemap_off;
-	set_bit(phb->ioda.reserved_pe_idx, phb->ioda.pe_alloc);
+
+	/*
+	 * Choose PE number for root bus, which shouldn't have
+	 * M64 resources consumed by its child devices. To pick
+	 * the PE number adjacent to the reserved one if possible.
+	 */
+	pnv_ioda_reserve_pe(phb, phb->ioda.reserved_pe_idx);
+	if (phb->ioda.reserved_pe_idx == 0) {
+		phb->ioda.root_pe_idx = 1;
+		pnv_ioda_reserve_pe(phb, phb->ioda.root_pe_idx);
+	} else if (phb->ioda.reserved_pe_idx == (phb->ioda.total_pe_num - 1)) {
+		phb->ioda.root_pe_idx = phb->ioda.reserved_pe_idx - 1;
+		pnv_ioda_reserve_pe(phb, phb->ioda.root_pe_idx);
+	} else {
+		phb->ioda.root_pe_idx = IODA_INVALID_PE;
+	}
 
 	INIT_LIST_HEAD(&phb->ioda.pe_list);
 	mutex_init(&phb->ioda.pe_list_mutex);
diff --git a/arch/powerpc/platforms/powernv/pci.h b/arch/powerpc/platforms/powernv/pci.h
index de56ed2046b4..8927e5d1c09e 100644
--- a/arch/powerpc/platforms/powernv/pci.h
+++ b/arch/powerpc/platforms/powernv/pci.h
@@ -110,6 +110,8 @@ struct pnv_phb {
 		/* Global bridge info */
 		unsigned int		total_pe_num;
 		unsigned int		reserved_pe_idx;
+		unsigned int		root_pe_idx;
+		bool			root_pe_populated;
 
 		/* 32-bit MMIO window */
 		unsigned int		m32_size;