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- Added `codemode` option to `ReaOptions` for flexible tool behavior. - Updated `parseOptions` to validate and handle `codemode` correctly. - Enhanced readiness reporting to include `codemodeToolCount` and `directToolCount`. - Implemented `countReaToolsByMode` to categorize tools based on their mode. - Introduced `applyReaToolCatalogPolicy` to manage tool registration and options. - Registered new commands for REA, ensuring they operate within the context of the server. - Updated tests to cover new functionality and ensure correctness of tool counts and options. - Adjusted documentation to reflect changes in options and tool behavior.