mirror of
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1001 lines
25 KiB
C
1001 lines
25 KiB
C
/* radare - LGPL - Copyright 2009-2022 - pancake, nikolai */
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#include <r_util/r_diff.h>
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// the non-system-diff doesnt work well
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#define USE_SYSTEM_DIFF 1
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R_API RDiff *r_diff_new_from(ut64 off_a, ut64 off_b) {
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RDiff *d = R_NEW0 (RDiff);
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if (d) {
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d->delta = 1;
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d->user = NULL;
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d->off_a = off_a;
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d->off_b = off_b;
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d->diff_cmd = strdup ("diff -au");
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}
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return d;
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}
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R_API RDiff *r_diff_new(void) {
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return r_diff_new_from (0, 0);
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}
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R_API void r_diff_free(RDiff *d) {
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if (d) {
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free (d->diff_cmd);
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free (d);
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}
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}
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R_API int r_diff_set_callback(RDiff *d, RDiffCallback callback, void *user) {
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d->callback = callback;
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d->user = user;
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return 1;
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}
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R_API int r_diff_set_delta(RDiff *d, int delta) {
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d->delta = delta;
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return 1;
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}
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typedef struct levrow {
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ut32 *changes;
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ut32 start, end;
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} Levrow;
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static void lev_matrix_free(Levrow *matrix, ut32 len) {
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size_t i;
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for (i = 0; i < len; i++) {
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free (matrix[i].changes);
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}
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free (matrix);
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}
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static inline void lev_row_adjust(Levrow *row, ut32 maxdst, ut32 rownum, ut32 buflen, ut32 delta) {
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delta += rownum;
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ut64 end = (ut64)delta + maxdst;
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row->end = R_MIN (end, buflen);
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row->start = delta <= maxdst? 0: delta - maxdst;
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}
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static inline Levrow *lev_row_init(Levrow *matrix, ut32 maxdst, ut32 rownum, ut32 buflen, ut32 delta) {
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R_RETURN_VAL_IF_FAIL (matrix && !matrix[rownum].changes, false);
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Levrow *row = matrix + rownum;
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lev_row_adjust (row, maxdst, rownum, buflen, delta);
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if ((row->changes = R_NEWS (ut32, row->end - row->start + 1)) == NULL) {
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return NULL;
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}
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return row;
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}
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static inline ut32 lev_get_val(Levrow *row, ut32 i) {
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if (i >= row->start && i <= row->end) {
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return row->changes[i - row->start];
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}
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return UT32_MAX - 1; // -1 so a +1 with sub weight does not overflow
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}
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// obtains array of operations, in reverse order, to get from column to row of
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// matrix
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static st32 lev_parse_matrix(Levrow *matrix, ut32 len, bool invert, RLevOp **chgs) {
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R_RETURN_VAL_IF_FAIL (len >= 2 && matrix && chgs && !*chgs, -1);
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Levrow *row = matrix + len - 1;
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Levrow *prev_row = row - 1;
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RLevOp a = LEVADD;
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RLevOp d = LEVDEL;
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if (invert) {
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a = LEVDEL;
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d = LEVADD;
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}
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const size_t overflow = (size_t)-1 / (2 * sizeof (RLevOp));
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int j = row->end;
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size_t size = j;
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RLevOp *changes = R_NEWS (RLevOp, size);
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if (!changes) {
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return -1;
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}
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size_t insert = 0;
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while (row != matrix) { // matrix[0] is not processed
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ut32 sub = lev_get_val (prev_row, j - 1);
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ut32 del = lev_get_val (prev_row, j);
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ut32 add = lev_get_val (row, j - 1);
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if (insert >= size) {
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if (size >= overflow) {
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// overflow paranoia
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free (changes);
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return -1;
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}
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size *= 2;
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RLevOp *tmp = realloc (changes, size * sizeof (RLevOp));
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if (!tmp) {
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free (changes);
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return -1;
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}
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changes = tmp;
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}
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if (sub <= del && sub <= add) {
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if (sub == lev_get_val (row, j)) {
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changes[insert++] = LEVNOP;
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} else {
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changes[insert++] = LEVSUB;
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}
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j--;
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} else if (del <= add && del <= sub) {
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changes[insert++] = d;
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} else {
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changes[insert++] = a;
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j--;
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continue; // continue with same rows
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}
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free (row->changes);
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row->changes = NULL;
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row = prev_row--;
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}
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if (size - insert < j) {
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if (size > overflow) {
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// overly paranoid
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free (changes);
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return -1;
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}
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size += j - (size - insert);
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RLevOp *tmp = realloc (changes, size * sizeof (RLevOp));
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if (!tmp) {
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free (changes);
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return -1;
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}
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changes = tmp;
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}
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while (j > 0) {
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changes[insert++] = a;
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j--;
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}
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*chgs = changes;
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return insert;
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}
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static inline void lev_fill_changes(RLevOp *chgs, RLevOp op, ut32 count) {
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while (count > 0) {
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count--;
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chgs[count] = op;
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}
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}
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typedef struct {
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RDiff *d;
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char *str;
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} RDiffUser;
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#if USE_SYSTEM_DIFF
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R_API char *r_diff_buffers_tostring(RDiff *d, const ut8 *a, int la, const ut8 *b, int lb) {
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return r_diff_buffers_unified (d, a, la, b, lb);
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}
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#else
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// XXX buffers_static doesnt constructs the correct string in this callback
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static int tostring(RDiff *d, void *user, RDiffOp *op) {
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RDiffUser *u = (RDiffUser *)user;
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if (op->a_len > 0) {
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char *a_str = r_str_ndup ((const char *)op->a_buf + op->a_off, op->a_len);
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u->str = r_str_appendf (u->str, "+(%s)", a_str);
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#if 0
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char *bufasm = r_str_prefix_all (a_str, "- ");
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u->str = r_str_appendf (u->str, "-(%s)", bufasm);
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free (bufasm);
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#endif
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free (a_str);
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}
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if (op->b_len > 0) {
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char *b_str = r_str_ndup ((const char *)op->b_buf + op->b_off, op->b_len);
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u->str = r_str_appendf (u->str, "+(%s)", b_str);
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#if 0
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char *bufasm = r_str_prefix_all (b_str, "+ ");
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u->str = r_str_appendf (u->str, "+(%s)", bufasm);
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free (bufasm);
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#endif
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free (b_str);
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}
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if (op->a_len == op->b_len) {
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char *b_str = r_str_ndup ((const char *)op->a_buf + op->a_off, op->a_len);
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// char *bufasm = r_str_prefix_all (b_str, " ");
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u->str = r_str_appendf (u->str, "%s", b_str);
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// free (bufasm);
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free (b_str);
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}
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return 1;
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}
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R_API char *r_diff_buffers_tostring(RDiff *d, const ut8 *a, int la, const ut8 *b, int lb) {
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// XXX buffers_static doesnt constructs the correct string in this callback
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void *c = d->callback;
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void *u = d->user;
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RDiffUser du = {d, strdup ("")};
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d->callback = &tostring;
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d->user = &du;
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r_diff_buffers_static (d, a, la, b, lb);
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d->callback = c;
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d->user = u;
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return du.str;
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}
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#endif
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#define diffHit() { \
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const size_t i_hit = i - hit; \
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int ra = la - i_hit; \
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int rb = lb - i_hit; \
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struct r_diff_op_t o = { \
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.a_off = d->off_a+i-hit, .a_buf = a+i-hit, .a_len = R_MIN (hit, ra), \
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.b_off = d->off_b+i-hit, .b_buf = b+i-hit, .b_len = R_MIN (hit, rb) \
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}; \
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d->callback (d, d->user, &o); \
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}
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R_API int r_diff_buffers_static(RDiff *d, const ut8 *a, int la, const ut8 *b, int lb) {
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int i, len;
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int hit = 0;
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la = R_ABS (la);
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lb = R_ABS (lb);
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if (la != lb) {
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len = R_MIN (la, lb);
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R_LOG_INFO ("Buffer truncated to %d byte(s) (%d not compared)", len, R_ABS(lb - la));
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} else {
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len = la;
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}
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for (i = 0; i < len; i++) {
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if (a[i] != b[i]) {
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hit++;
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} else {
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if (hit > 0) {
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diffHit ();
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hit = 0;
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}
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}
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}
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if (hit > 0) {
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diffHit ();
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}
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return 0;
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}
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R_API char *r_diff_buffers_unified(RDiff *d, const ut8 *a, int la, const ut8 *b, int lb) {
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char *fa = NULL;
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char *fb = NULL;
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int fd = r_file_mkstemp ("r_diff", &fa);
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int fe = r_file_mkstemp ("r_diff", &fb);
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if (fd == -1 || fe == -1) {
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R_LOG_ERROR ("Failed to create temporary files");
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return NULL;
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}
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if (!fa || !fb) {
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R_LOG_ERROR ("fafb nul");
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free (fa);
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free (fb);
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return NULL;
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}
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r_file_dump (fa, a, la, 0);
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r_file_dump (fb, b, lb, 0);
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#if 0
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if (r_mem_is_printable (a, R_MIN (5, la))) {
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r_file_dump (fa, a, la, 0);
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r_file_dump (fb, b, lb, 0);
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} else {
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r_file_hexdump (fa, a, la, 0);
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r_file_hexdump (fb, b, lb, 0);
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}
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#endif
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char *err = NULL;
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char *out = NULL;
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int out_len;
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char *diff_cmdline = r_str_newf ("%s %s %s", d->diff_cmd, fa, fb);
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if (diff_cmdline) {
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(void)r_sys_cmd_str_full (diff_cmdline, NULL, 0, &out, &out_len, &err);
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free (diff_cmdline);
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}
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close (fd);
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close (fe);
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r_file_rm (fa);
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r_file_rm (fb);
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free (fa);
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free (fb);
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free (err);
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return out;
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}
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R_API int r_diff_buffers(RDiff *d, const ut8 *a, ut32 la, const ut8 *b, ut32 lb) {
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return d->delta
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? r_diff_buffers_delta (d, a, la, b, lb)
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: r_diff_buffers_static (d, a, la, b, lb);
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}
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// Eugene W. Myers O(ND) diff algorithm
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// Returns edit distance with costs: insertion=1, deletion=1, no substitution
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R_API bool r_diff_buffers_distance_myers(RDiff *diff, const ut8 *a, ut32 la, const ut8 *b, ut32 lb, ut32 *distance, double *similarity) {
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R_RETURN_VAL_IF_FAIL (a && b, false);
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const bool verbose = diff? diff->verbose: false;
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const ut32 length = la + lb;
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const ut8 *ea = a + la, *eb = b + lb;
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// Strip prefix
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for (; a < ea && b < eb && *a == *b; a++, b++) {}
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// Strip suffix
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for (; a < ea && b < eb && ea[-1] == eb[-1]; ea--, eb--) {}
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la = ea - a;
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lb = eb - b;
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ut32 *v0, *v;
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st64 m = (st64)la + lb, di = 0, low, high, i, x, y;
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if (m + 2 > SIZE_MAX / sizeof (st64) || !(v0 = malloc ((m + 2) * sizeof (ut32)))) {
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return false;
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}
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v = v0 + lb;
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v[1] = 0;
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for (di = 0; di <= m; di++) {
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low = -di + 2 * R_MAX (0, di - (st64)lb);
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high = di - 2 * R_MAX (0, di - (st64)la);
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for (i = low; i <= high; i += 2) {
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x = i == -di || (i != di && v[i-1] < v[i+1]) ? v[i+1] : v[i-1] + 1;
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y = x - i;
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while (x < la && y < lb && a[x] == b[y]) {
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x++;
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y++;
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}
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v[i] = x;
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if (x == la && y == lb) {
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goto out;
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}
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}
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if (verbose && di % 10000 == 0) {
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eprintf ("\rProcessing dist %" PFMT64d " of max %" PFMT64d "\r", (st64)di, (st64)m);
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}
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}
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out:
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if (verbose) {
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eprintf ("\n");
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}
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free (v0);
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//Clean up output on loop exit (purely aesthetic)
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if (distance) {
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*distance = di;
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}
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if (similarity) {
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*similarity = length ? 1.0 - (double)di / length : 1.0;
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}
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return true;
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}
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R_API bool r_diff_buffers_distance_levenshtein(RDiff *diff, const ut8 *a, ut32 la, const ut8 *b, ut32 lb, ut32 *distance, double *similarity) {
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R_RETURN_VAL_IF_FAIL (a && b, false);
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const bool verbose = diff ? diff->verbose : false;
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const ut32 length = R_MAX (la, lb);
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const ut8 *ea = a + la, *eb = b + lb, *t;
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ut32 *d, i, j;
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// Strip prefix
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for (; a < ea && b < eb && *a == *b; a++, b++) {}
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// Strip suffix
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for (; a < ea && b < eb && ea[-1] == eb[-1]; ea--, eb--) {}
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la = ea - a;
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lb = eb - b;
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if (la < lb) {
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i = la;
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la = lb;
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lb = i;
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t = a;
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a = b;
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b = t;
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}
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if (sizeof (ut32) > SIZE_MAX / (lb + 1) || !(d = malloc ((lb + 1) * sizeof (ut32)))) {
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return false;
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}
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for (i = 0; i <= lb; i++) {
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d[i] = i;
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}
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for (i = 0; i < la; i++) {
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ut32 ul = d[0];
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d[0] = i + 1;
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for (j = 0; j < lb; j++) {
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ut32 u = d[j + 1];
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d[j + 1] = a[i] == b[j] ? ul : R_MIN (ul, R_MIN (d[j], u)) + 1;
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ul = u;
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}
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if (verbose && i % 10000 == 0) {
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eprintf ("\rProcessing %" PFMT32u " of %" PFMT32u "\r", i, la);
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}
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}
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if (verbose) {
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eprintf ("\n");
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}
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if (distance) {
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*distance = d[lb];
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}
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if (similarity) {
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*similarity = length ? 1.0 - (double)d[lb] / length : 1.0;
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}
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free (d);
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return true;
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}
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R_API bool r_diff_buffers_distance(RDiff *d, const ut8 *a, ut32 la, const ut8 *b, ut32 lb, ut32 *distance, double *similarity) {
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if (d) {
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switch (d->type) {
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case 'm':
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return r_diff_buffers_distance_myers (d, a, la, b, lb, distance, similarity);
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case 'l':
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default:
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break;
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}
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}
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return r_diff_buffers_distance_levenshtein (d, a, la, b, lb, distance, similarity);
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}
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// Use Needleman–Wunsch to diffchar.
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// This is an O(mn) algo in both space and time.
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// Note that 64KB * 64KB * 2 = 8GB.
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// TODO Discard common prefix and suffix
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R_API RDiffChar *r_diffchar_new(const ut8 *a, const ut8 *b) {
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R_RETURN_VAL_IF_FAIL (a && b, NULL);
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RDiffChar *diffchar = R_NEW0 (RDiffChar);
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if (!diffchar) {
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return NULL;
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}
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const size_t len_a = strlen ((const char *)a);
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const size_t len_b = strlen ((const char *)b);
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const size_t len_long = len_a > len_b ? len_a : len_b;
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const size_t dim = len_long + 1;
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char *dup_a = malloc (len_long);
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char *dup_b = malloc (len_long);
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st16 *align_table = malloc (dim * dim * sizeof (st16));
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ut8 *align_a = malloc (2 * len_long);
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ut8 *align_b = malloc (2 * len_long);
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if (!(dup_a && dup_b && align_table && align_a && align_b)) {
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free (dup_a);
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free (dup_b);
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free (align_table);
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free (align_a);
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free (align_b);
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free (diffchar);
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return NULL;
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}
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snprintf (dup_a, len_long, "%s", a);
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a = (const ut8*)dup_a;
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snprintf (dup_b, len_long, "%s", b);
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b = (const ut8*)dup_b;
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// Fill table
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size_t row, col;
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*align_table = 0;
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for (row = 1; row < dim; row++) {
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// TODO Clamping [ST16_MIN + 1, .]
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*(align_table + row) = *(align_table + row * dim) = -(st16)row;
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}
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const st16 match = 1;
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const st16 match_nl = 2;
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const st16 mismatch = -2;
|
||
const st16 gap = -1;
|
||
for (row = 1; row < dim; row++) {
|
||
for (col = 1; col < dim; col++) {
|
||
// TODO Clamping [ST16_MIN + 1, ST16_MAX]
|
||
const ut8 a_ch = a[col - 1];
|
||
const ut8 b_ch = b[row - 1];
|
||
const st16 tl_score = *(align_table + (row - 1) * dim + col - 1)
|
||
+ (a_ch == b_ch
|
||
? (a_ch == '\n'
|
||
? match_nl
|
||
: match)
|
||
: mismatch);
|
||
const st16 t_score = *(align_table + (row - 1) * dim + col) + gap;
|
||
const st16 l_score = *(align_table + row * dim + col - 1) + gap;
|
||
st16 score;
|
||
if (tl_score >= t_score && tl_score >= l_score) {
|
||
score = tl_score;
|
||
} else if (t_score >= tl_score && t_score >= l_score) {
|
||
score = t_score;
|
||
} else {
|
||
score = l_score;
|
||
}
|
||
*(align_table + row * dim + col) = score;
|
||
}
|
||
}
|
||
|
||
#if 0
|
||
// Print table (Debug)
|
||
char char_str[3] = { ' ' };
|
||
printf ("%4s ", char_str);
|
||
for (col = 0; col < dim; col++) {
|
||
if (col && a[col - 1] == '\n') {
|
||
char_str[0] = '\\';
|
||
char_str[1] = 'n';
|
||
} else {
|
||
char_str[0] = col ? a[col - 1] : ' ';
|
||
char_str[1] = 0;
|
||
}
|
||
printf ("%4s ", char_str);
|
||
}
|
||
printf ("\n");
|
||
for (row = 0; row < dim; row++) {
|
||
if (row && b[row - 1] == '\n') {
|
||
char_str[0] = '\\';
|
||
char_str[1] = 'n';
|
||
} else {
|
||
char_str[0] = row ? b[row - 1] : ' ';
|
||
char_str[1] = 0;
|
||
}
|
||
printf ("%4s ", char_str);
|
||
for (col = 0; col < dim; col++) {
|
||
printf ("%4d ", *(align_table + row * dim + col));
|
||
}
|
||
printf ("\n");
|
||
}
|
||
#endif
|
||
|
||
// Do alignment
|
||
size_t idx_a = len_long - 1;
|
||
size_t idx_b = len_long - 1;
|
||
size_t idx_align = 2 * len_long - 1;
|
||
size_t pos_row = dim - 1;
|
||
size_t pos_col = dim - 1;
|
||
while (pos_row || pos_col) {
|
||
const st16 tl_score = (pos_row > 0 && pos_col > 0) ?
|
||
*(align_table + (pos_row - 1) * dim + pos_col - 1) :
|
||
ST16_MIN;
|
||
const st16 t_score = pos_row > 0 ?
|
||
*(align_table + (pos_row - 1) * dim + pos_col) :
|
||
ST16_MIN;
|
||
const st16 l_score = pos_col > 0 ?
|
||
*(align_table + pos_row * dim + pos_col - 1) :
|
||
ST16_MIN;
|
||
const bool match = a[idx_a] == b[idx_b];
|
||
if (t_score >= l_score && (!match || t_score >= tl_score)) {
|
||
align_a[idx_align] = 0;
|
||
align_b[idx_align] = b[idx_b--];
|
||
idx_align--;
|
||
pos_row--;
|
||
} else if (l_score >= t_score && (!match || l_score >= tl_score)) {
|
||
align_a[idx_align] = a[idx_a--];
|
||
align_b[idx_align] = 0;
|
||
idx_align--;
|
||
pos_col--;
|
||
} else {
|
||
align_a[idx_align] = a[idx_a--];
|
||
align_b[idx_align] = b[idx_b--];
|
||
idx_align--;
|
||
pos_row--;
|
||
pos_col--;
|
||
}
|
||
}
|
||
idx_align++;
|
||
const size_t start_align = idx_align;
|
||
|
||
#if 0
|
||
// Print alignment (Debug)
|
||
for (; idx_align < 2 * len_long; idx_align++) {
|
||
const ut8 ch = align_a[idx_align];
|
||
if (align_b[idx_align] == '\n' && ch != '\n') {
|
||
printf (ch ? " " : "-");
|
||
}
|
||
if (ch == 0) {
|
||
printf ("-");
|
||
} else if (ch == '\n') {
|
||
printf ("\\n");
|
||
} else {
|
||
printf ("%c", ch);
|
||
}
|
||
}
|
||
printf ("\n");
|
||
for (idx_align = start_align; idx_align < 2 * len_long; idx_align++) {
|
||
const ut8 ch = align_b[idx_align];
|
||
if (align_a[idx_align] == '\n' && ch != '\n') {
|
||
printf (ch ? " " : "-");
|
||
}
|
||
if (ch == 0) {
|
||
printf ("-");
|
||
} else if (ch == '\n') {
|
||
printf ("\\n");
|
||
} else {
|
||
printf ("%c", ch);
|
||
}
|
||
}
|
||
printf ("\n");
|
||
#endif
|
||
|
||
diffchar->align_a = align_a;
|
||
diffchar->align_b = align_b;
|
||
diffchar->len_buf = len_long;
|
||
diffchar->start_align = start_align;
|
||
free (dup_a);
|
||
free (dup_b);
|
||
free (align_table);
|
||
return diffchar;
|
||
}
|
||
|
||
typedef enum {
|
||
R2R_ALIGN_MATCH, R2R_ALIGN_MISMATCH, R2R_ALIGN_TOP_GAP, R2R_ALIGN_BOTTOM_GAP
|
||
} R2RCharAlignment;
|
||
|
||
typedef enum {
|
||
R2R_DIFF_MATCH, R2R_DIFF_DELETE, R2R_DIFF_INSERT
|
||
} R2RPrintDiffMode;
|
||
|
||
R_API void r_diffchar_print(RDiffChar *diffchar) {
|
||
R_RETURN_IF_FAIL (diffchar);
|
||
R2RPrintDiffMode cur_mode = R2R_DIFF_MATCH;
|
||
R2RCharAlignment cur_align;
|
||
size_t idx_align = diffchar->start_align;
|
||
while (idx_align < 2 * diffchar->len_buf) {
|
||
const ut8 a_ch = diffchar->align_a[idx_align];
|
||
const ut8 b_ch = diffchar->align_b[idx_align];
|
||
if (a_ch && !b_ch) {
|
||
cur_align = R2R_ALIGN_BOTTOM_GAP;
|
||
} else if (!a_ch && b_ch) {
|
||
cur_align = R2R_ALIGN_TOP_GAP;
|
||
} else if (a_ch != b_ch) {
|
||
R_LOG_ERROR ("Internal mismatch detected!");
|
||
cur_align = R2R_ALIGN_MISMATCH;
|
||
} else {
|
||
cur_align = R2R_ALIGN_MATCH;
|
||
}
|
||
if (cur_mode == R2R_DIFF_MATCH) {
|
||
if (cur_align == R2R_ALIGN_MATCH) {
|
||
if (a_ch) {
|
||
printf ("%c", a_ch);
|
||
}
|
||
} else if (cur_align == R2R_ALIGN_BOTTOM_GAP) {
|
||
printf (a_ch == '\n'
|
||
? "%c" Color_HLDELETE
|
||
: Color_HLDELETE "%c",
|
||
a_ch);
|
||
cur_mode = R2R_DIFF_DELETE;
|
||
} else if (cur_align == R2R_ALIGN_TOP_GAP) {
|
||
printf (b_ch == '\n'
|
||
? "%c" Color_HLINSERT
|
||
: Color_HLINSERT "%c",
|
||
b_ch);
|
||
cur_mode = R2R_DIFF_INSERT;
|
||
}
|
||
} else if (cur_mode == R2R_DIFF_DELETE) {
|
||
if (cur_align == R2R_ALIGN_MATCH) {
|
||
printf (Color_RESET);
|
||
if (a_ch) {
|
||
printf ("%c", a_ch);
|
||
}
|
||
cur_mode = R2R_DIFF_MATCH;
|
||
} else if (cur_align == R2R_ALIGN_BOTTOM_GAP) {
|
||
printf (a_ch == '\n'
|
||
? Color_RESET "%c" Color_HLDELETE
|
||
: "%c",
|
||
a_ch);
|
||
} else if (cur_align == R2R_ALIGN_TOP_GAP) {
|
||
printf (b_ch == '\n'
|
||
? Color_RESET "%c" Color_HLINSERT
|
||
: Color_HLINSERT "%c",
|
||
b_ch);
|
||
cur_mode = R2R_DIFF_INSERT;
|
||
}
|
||
} else if (cur_mode == R2R_DIFF_INSERT) {
|
||
if (cur_align == R2R_ALIGN_MATCH) {
|
||
printf (Color_RESET);
|
||
if (a_ch) {
|
||
printf ("%c", a_ch);
|
||
}
|
||
cur_mode = R2R_DIFF_MATCH;
|
||
} else if (cur_align == R2R_ALIGN_BOTTOM_GAP) {
|
||
printf (a_ch == '\n'
|
||
? Color_RESET "%c" Color_HLDELETE
|
||
: Color_HLDELETE "%c",
|
||
a_ch);
|
||
cur_mode = R2R_DIFF_DELETE;
|
||
} else if (cur_align == R2R_ALIGN_TOP_GAP) {
|
||
printf (b_ch == '\n'
|
||
? Color_RESET "%c" Color_HLINSERT
|
||
: "%c",
|
||
b_ch);
|
||
}
|
||
}
|
||
idx_align++;
|
||
}
|
||
printf (Color_RESET "\n");
|
||
}
|
||
|
||
R_API void r_diffchar_free(RDiffChar *diffchar) {
|
||
if (diffchar) {
|
||
free ((ut8 *)diffchar->align_a);
|
||
free ((ut8 *)diffchar->align_b);
|
||
free (diffchar);
|
||
}
|
||
}
|
||
|
||
static st32 r_diff_levenshtein_nopath(RLevBuf *bufa, RLevBuf *bufb, ut32 maxdst, RLevMatches levdiff, size_t skip, ut32 alen, ut32 blen) {
|
||
R_RETURN_VAL_IF_FAIL (bufa && bufb && bufa->buf && bufb->buf, -1);
|
||
R_RETURN_VAL_IF_FAIL (blen >= alen && alen > 0, -1);
|
||
|
||
// max distance is at most length of longer input, or provided by user
|
||
ut32 origdst = maxdst = R_MIN (maxdst, blen);
|
||
|
||
// two rows
|
||
Levrow *matrix = R_NEWS0 (Levrow, 2);
|
||
if (!matrix) {
|
||
return -1;
|
||
}
|
||
|
||
Levrow *row = matrix;
|
||
Levrow *prev_row = matrix + 1;
|
||
// must allocate for largest row, not the first row, so don't use
|
||
// lev_row_init
|
||
row->changes = R_NEWS (ut32, 2 * maxdst + 1);
|
||
prev_row->changes = R_NEWS (ut32, 2 * maxdst + 1);
|
||
if (!prev_row->changes || !row->changes) {
|
||
lev_matrix_free (matrix, alen + 1);
|
||
return -1;
|
||
}
|
||
|
||
ut32 ldelta = blen - alen;
|
||
if (ldelta > maxdst) {
|
||
lev_matrix_free (matrix, alen + 1);
|
||
return ST32_MAX;
|
||
}
|
||
|
||
lev_row_adjust (row, maxdst, 0, blen, ldelta);
|
||
size_t i;
|
||
for (i = row->start; i <= row->end; i++) {
|
||
row->changes[i] = i;
|
||
}
|
||
|
||
// do the rest of the rows
|
||
ut32 oldmin = 0; // minimum cell in row 0
|
||
for (i = 1; i <= alen; i++) { // loop through all rows
|
||
// switch rows
|
||
if (row == matrix) {
|
||
row = prev_row;
|
||
prev_row = matrix;
|
||
} else {
|
||
prev_row = row;
|
||
row = matrix;
|
||
}
|
||
lev_row_adjust (row, maxdst, i, blen, ldelta);
|
||
|
||
ut32 start = row->start;
|
||
ut32 udel = UT32_MAX;
|
||
if (start == 0) {
|
||
row->changes[0] = udel = i;
|
||
start++;
|
||
}
|
||
ut32 newmin = UT32_MAX;
|
||
ut32 sub = lev_get_val (prev_row, start - 1);
|
||
ut32 j;
|
||
for (j = start; j <= row->end; j++) {
|
||
ut32 add = lev_get_val (prev_row, j);
|
||
ut32 ans = R_MIN (udel, add) + 1;
|
||
if (ans >= sub) {
|
||
// on rare occassions, when add/del is obviously better then
|
||
// sub, we can skip levdiff call
|
||
int d = levdiff (bufa, bufb, i + skip - 1, j + skip - 1)? 1: 0;
|
||
ans = R_MIN (ans, sub + d);
|
||
}
|
||
sub = add;
|
||
udel = ans;
|
||
row->changes[j - row->start] = ans;
|
||
if (ans < newmin) {
|
||
newmin = ans;
|
||
}
|
||
}
|
||
|
||
if (newmin > oldmin) {
|
||
if (maxdst == 0) { // provided bad maxdst
|
||
lev_matrix_free (matrix, 2);
|
||
return ST32_MAX;
|
||
}
|
||
// if smallest element of this row is larger then the smallest
|
||
// element of previous row a change must occur and thus the
|
||
// distance for the rest of the alg can be reduced.
|
||
oldmin = newmin;
|
||
maxdst--;
|
||
}
|
||
}
|
||
|
||
st32 ret = lev_get_val (row, row->end);
|
||
if (ret > origdst) {
|
||
ret = ST32_MAX;
|
||
}
|
||
lev_matrix_free (matrix, 2);
|
||
return ret;
|
||
}
|
||
|
||
/**
|
||
* \brief Return Levenshtein distance and put array of changes, of unknown
|
||
* lenght, in chgs
|
||
* \param bufa Structure to represent starting buffer
|
||
* \param bufb Structure to represent the buffer to reach
|
||
* \param maxdst Max Levenshtein distance need, send UT32_MAX if unknown.
|
||
* \param levdiff Function pointer returning true when there is a difference.
|
||
* \param chgs Returned array of changes to get from bufa to bufb
|
||
*
|
||
* Perform a Levenshtein diff on two buffers and obtain a RLevOp array of
|
||
* changes. The length of the RLevOp array is NOT provided, it is terminated by
|
||
* the LEVEND value. Providing a good maxdst value will increase performance of
|
||
* this algorithm. If computed maxdst is exceeded ST32_MAX will be returned and
|
||
* chgs will be left NULL. The chgs value must point to a NULL pointer. The
|
||
* caller must free *chgs.
|
||
*/
|
||
R_API st32 r_diff_levenshtein_path(RLevBuf *bufa, RLevBuf *bufb, ut32 maxdst, RLevMatches levdiff, RLevOp **chgs) {
|
||
R_RETURN_VAL_IF_FAIL (bufa && bufb && bufa->buf && bufb->buf, -1);
|
||
R_RETURN_VAL_IF_FAIL (!chgs || !*chgs, -1); // if chgs then it must point at NULL
|
||
|
||
// force buffer b to be longer, this will invert add/del resulsts
|
||
bool invert = false;
|
||
if (bufb->len < bufa->len) {
|
||
invert = true;
|
||
RLevBuf *x = bufa;
|
||
bufa = bufb;
|
||
bufb = x;
|
||
}
|
||
R_RETURN_VAL_IF_FAIL (bufb->len < UT32_MAX, -1);
|
||
ut32 ldelta = bufb->len - bufa->len;
|
||
if (ldelta > maxdst) {
|
||
return ST32_MAX;
|
||
}
|
||
|
||
// Strip start as long as bytes don't diff
|
||
size_t skip;
|
||
ut32 alen = bufa->len;
|
||
ut32 blen = bufb->len;
|
||
for (skip = 0; skip < alen && !levdiff (bufa, bufb, skip, skip); skip++) {
|
||
}
|
||
|
||
// strip suffix as long as bytes don't diff
|
||
size_t i;
|
||
for (i = 0; alen > skip && !levdiff (bufa, bufb, alen - 1, blen - 1); alen--, blen--, i++) {}
|
||
alen -= skip;
|
||
blen -= skip;
|
||
|
||
if (alen == 0) {
|
||
if (chgs) {
|
||
RLevOp *c = R_NEWS (RLevOp, skip + i + blen + 1);
|
||
if (!c) {
|
||
return -1;
|
||
}
|
||
*chgs = c;
|
||
|
||
lev_fill_changes (c, LEVNOP, skip);
|
||
c += skip;
|
||
lev_fill_changes (c, invert? LEVDEL: LEVADD, blen);
|
||
c += blen;
|
||
lev_fill_changes (c, LEVNOP, i);
|
||
c += i;
|
||
|
||
*c = LEVEND;
|
||
}
|
||
return blen;
|
||
}
|
||
if (!chgs) {
|
||
return r_diff_levenshtein_nopath (bufa, bufb, maxdst, levdiff, skip, alen, blen);
|
||
}
|
||
|
||
// max distance is at most length of longer input, or provided by user
|
||
ut32 origdst = maxdst = R_MIN (maxdst, blen);
|
||
|
||
// alloc array of rows
|
||
Levrow *matrix = R_NEWS0 (Levrow, alen + 1);
|
||
if (!matrix) {
|
||
return -1;
|
||
}
|
||
|
||
// init row 0
|
||
Levrow *row = lev_row_init (matrix, maxdst, 0, blen, ldelta);
|
||
if (!row) {
|
||
lev_matrix_free (matrix, alen + 1);
|
||
return -1;
|
||
}
|
||
for (i = row->start; i <= row->end; i++) {
|
||
row->changes[i] = i;
|
||
}
|
||
|
||
// do the rest of the rows
|
||
ut32 oldmin = 0; // minimum cell in row 0
|
||
Levrow *prev_row;
|
||
for (i = 1; i <= alen; i++) { // loop through all rows
|
||
prev_row = row;
|
||
if ((row = lev_row_init (matrix, maxdst, i, blen, ldelta)) == NULL) {
|
||
lev_matrix_free (matrix, alen + 1);
|
||
return -1;
|
||
}
|
||
|
||
ut32 start = row->start;
|
||
ut32 udel = UT32_MAX;
|
||
if (start == 0) {
|
||
row->changes[0] = udel = i;
|
||
start++;
|
||
}
|
||
ut32 newmin = UT32_MAX;
|
||
ut32 sub = lev_get_val (prev_row, start - 1);
|
||
ut32 j;
|
||
for (j = start; j <= row->end; j++) {
|
||
ut32 add = lev_get_val (prev_row, j);
|
||
ut32 ans = R_MIN (udel, add) + 1;
|
||
if (ans >= sub) {
|
||
// on rare occassions, when add/del is obviously better then
|
||
// sub, we can skip levdiff call
|
||
int d = levdiff (bufa, bufb, i + skip - 1, j + skip - 1)? 1: 0;
|
||
ans = R_MIN (ans, sub + d);
|
||
}
|
||
sub = add;
|
||
udel = ans;
|
||
row->changes[j - row->start] = ans;
|
||
if (ans < newmin) {
|
||
newmin = ans;
|
||
}
|
||
}
|
||
if (newmin > oldmin) {
|
||
if (maxdst == 0) { // provided bad maxdst
|
||
lev_matrix_free (matrix, alen + 1);
|
||
return ST32_MAX;
|
||
}
|
||
// if smallest element of this row is larger then the smallest
|
||
// element of previous row a change must occur and thus the
|
||
// distance for the rest of the alg can be reduced.
|
||
oldmin = newmin;
|
||
maxdst--;
|
||
}
|
||
}
|
||
|
||
st32 ret = lev_get_val (row, row->end);
|
||
if (ret > origdst) {
|
||
// can happen when off by one
|
||
lev_matrix_free (matrix, alen + 1);
|
||
return ST32_MAX;
|
||
}
|
||
|
||
#if 0
|
||
{
|
||
// for debugging matrix
|
||
size_t total = 0;
|
||
for (i = 0; i <= alen; i++) {
|
||
Levrow *bow = matrix + i;
|
||
ut32 j;
|
||
printf (" ");
|
||
for (j = 0; j <= blen; j++) {
|
||
ut32 val = lev_get_val (bow, j);
|
||
if (val >= UT32_MAX - 1) {
|
||
printf (" ..");
|
||
} else {
|
||
printf (" %02x", val);
|
||
}
|
||
}
|
||
total += bow->end + 1 - bow->start;
|
||
printf (" buflen: %d\n", bow->end + 1 - bow->start);
|
||
}
|
||
printf ("\n%ld matrix cells allocated\n", total);
|
||
}
|
||
#endif
|
||
|
||
RLevOp *mtxpath = NULL;
|
||
st32 chg_size = lev_parse_matrix (matrix, alen + 1, invert, &mtxpath);
|
||
lev_matrix_free (matrix, alen + 1);
|
||
if (chg_size > 0 && mtxpath) {
|
||
ut32 tail = bufb->len - skip - blen;
|
||
RLevOp *c = R_NEWS (RLevOp, skip + chg_size + tail + 1);
|
||
*chgs = c;
|
||
if (c) {
|
||
lev_fill_changes (c, LEVNOP, skip);
|
||
c += skip;
|
||
|
||
while (chg_size > 0) {
|
||
chg_size--;
|
||
*c = mtxpath[chg_size];
|
||
c++;
|
||
}
|
||
lev_fill_changes (c, LEVNOP, tail);
|
||
c += tail;
|
||
*c = LEVEND;
|
||
}
|
||
}
|
||
free (mtxpath);
|
||
return ret;
|
||
}
|