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https://github.com/Mintplex-Labs/langchain-python.git
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444ca3f669
Hi there: As I implement the AnalyticDB VectorStore use two table to store the document before. It seems just use one table is a better way. So this commit is try to improve AnalyticDB VectorStore implementation without affecting user behavior: **1. Streamline the `post_init `behavior by creating a single table with vector indexing. 2. Update the `add_texts` API for document insertion. 3. Optimize `similarity_search_with_score_by_vector` to retrieve results directly from the table. 4. Implement `_similarity_search_with_relevance_scores`. 5. Add `embedding_dimension` parameter to support different dimension embedding functions.** Users can continue using the API as before. Test cases added before is enough to meet this commit.
418 lines
14 KiB
Python
418 lines
14 KiB
Python
"""VectorStore wrapper around a Postgres/PGVector database."""
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from __future__ import annotations
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import logging
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import uuid
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from typing import Any, Dict, Iterable, List, Optional, Sequence, Tuple, Type
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from sqlalchemy import REAL, Column, String, Table, create_engine, insert, text
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from sqlalchemy.dialects.postgresql import ARRAY, JSON, TEXT
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from sqlalchemy.engine import Row
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try:
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from sqlalchemy.orm import declarative_base
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except ImportError:
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from sqlalchemy.ext.declarative import declarative_base
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from langchain.docstore.document import Document
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from langchain.embeddings.base import Embeddings
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from langchain.utils import get_from_dict_or_env
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from langchain.vectorstores.base import VectorStore
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_LANGCHAIN_DEFAULT_EMBEDDING_DIM = 1536
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_LANGCHAIN_DEFAULT_COLLECTION_NAME = "langchain_document"
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Base = declarative_base() # type: Any
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class AnalyticDB(VectorStore):
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"""
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VectorStore implementation using AnalyticDB.
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AnalyticDB is a distributed full PostgresSQL syntax cloud-native database.
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- `connection_string` is a postgres connection string.
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- `embedding_function` any embedding function implementing
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`langchain.embeddings.base.Embeddings` interface.
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- `collection_name` is the name of the collection to use. (default: langchain)
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- NOTE: This is not the name of the table, but the name of the collection.
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The tables will be created when initializing the store (if not exists)
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So, make sure the user has the right permissions to create tables.
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- `pre_delete_collection` if True, will delete the collection if it exists.
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(default: False)
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- Useful for testing.
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"""
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def __init__(
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self,
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connection_string: str,
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embedding_function: Embeddings,
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embedding_dimension: int = _LANGCHAIN_DEFAULT_EMBEDDING_DIM,
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collection_name: str = _LANGCHAIN_DEFAULT_COLLECTION_NAME,
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pre_delete_collection: bool = False,
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logger: Optional[logging.Logger] = None,
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) -> None:
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self.connection_string = connection_string
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self.embedding_function = embedding_function
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self.embedding_dimension = embedding_dimension
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self.collection_name = collection_name
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self.pre_delete_collection = pre_delete_collection
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self.logger = logger or logging.getLogger(__name__)
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self.__post_init__()
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def __post_init__(
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self,
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) -> None:
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"""
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Initialize the store.
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"""
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self.engine = create_engine(self.connection_string)
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self.create_collection()
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def create_table_if_not_exists(self) -> None:
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# Define the dynamic table
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Table(
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self.collection_name,
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Base.metadata,
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Column("id", TEXT, primary_key=True, default=uuid.uuid4),
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Column("embedding", ARRAY(REAL)),
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Column("document", String, nullable=True),
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Column("metadata", JSON, nullable=True),
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extend_existing=True,
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)
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with self.engine.connect() as conn:
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# Create the table
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Base.metadata.create_all(conn)
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# Check if the index exists
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index_name = f"{self.collection_name}_embedding_idx"
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index_query = text(
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f"""
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SELECT 1
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FROM pg_indexes
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WHERE indexname = '{index_name}';
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"""
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)
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result = conn.execute(index_query).scalar()
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# Create the index if it doesn't exist
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if not result:
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index_statement = text(
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f"""
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CREATE INDEX {index_name}
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ON {self.collection_name} USING ann(embedding)
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WITH (
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"dim" = {self.embedding_dimension},
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"hnsw_m" = 100
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);
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"""
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)
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conn.execute(index_statement)
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conn.commit()
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def create_collection(self) -> None:
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if self.pre_delete_collection:
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self.delete_collection()
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self.create_table_if_not_exists()
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def delete_collection(self) -> None:
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self.logger.debug("Trying to delete collection")
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drop_statement = text(f"DROP TABLE IF EXISTS {self.collection_name};")
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with self.engine.connect() as conn:
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conn.execute(drop_statement)
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conn.commit()
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def add_texts(
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self,
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texts: Iterable[str],
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metadatas: Optional[List[dict]] = None,
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ids: Optional[List[str]] = None,
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batch_size: int = 500,
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**kwargs: Any,
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) -> List[str]:
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"""Run more texts through the embeddings and add to the vectorstore.
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Args:
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texts: Iterable of strings to add to the vectorstore.
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metadatas: Optional list of metadatas associated with the texts.
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kwargs: vectorstore specific parameters
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Returns:
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List of ids from adding the texts into the vectorstore.
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"""
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if ids is None:
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ids = [str(uuid.uuid1()) for _ in texts]
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embeddings = self.embedding_function.embed_documents(list(texts))
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if not metadatas:
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metadatas = [{} for _ in texts]
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# Define the table schema
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chunks_table = Table(
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self.collection_name,
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Base.metadata,
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Column("id", TEXT, primary_key=True),
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Column("embedding", ARRAY(REAL)),
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Column("document", String, nullable=True),
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Column("metadata", JSON, nullable=True),
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extend_existing=True,
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)
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chunks_table_data = []
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with self.engine.connect() as conn:
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for document, metadata, chunk_id, embedding in zip(
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texts, metadatas, ids, embeddings
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):
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chunks_table_data.append(
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{
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"id": chunk_id,
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"embedding": embedding,
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"document": document,
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"metadata": metadata,
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}
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)
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# Execute the batch insert when the batch size is reached
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if len(chunks_table_data) == batch_size:
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conn.execute(insert(chunks_table).values(chunks_table_data))
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# Clear the chunks_table_data list for the next batch
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chunks_table_data.clear()
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# Insert any remaining records that didn't make up a full batch
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if chunks_table_data:
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conn.execute(insert(chunks_table).values(chunks_table_data))
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# Commit the transaction only once after all records have been inserted
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conn.commit()
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return ids
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def similarity_search(
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self,
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query: str,
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k: int = 4,
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filter: Optional[dict] = None,
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**kwargs: Any,
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) -> List[Document]:
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"""Run similarity search with AnalyticDB with distance.
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Args:
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query (str): Query text to search for.
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k (int): Number of results to return. Defaults to 4.
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filter (Optional[Dict[str, str]]): Filter by metadata. Defaults to None.
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Returns:
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List of Documents most similar to the query.
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"""
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embedding = self.embedding_function.embed_query(text=query)
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return self.similarity_search_by_vector(
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embedding=embedding,
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k=k,
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filter=filter,
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)
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def similarity_search_with_score(
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self,
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query: str,
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k: int = 4,
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filter: Optional[dict] = None,
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) -> List[Tuple[Document, float]]:
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"""Return docs most similar to query.
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Args:
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query: Text to look up documents similar to.
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k: Number of Documents to return. Defaults to 4.
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filter (Optional[Dict[str, str]]): Filter by metadata. Defaults to None.
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Returns:
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List of Documents most similar to the query and score for each
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"""
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embedding = self.embedding_function.embed_query(query)
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docs = self.similarity_search_with_score_by_vector(
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embedding=embedding, k=k, filter=filter
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)
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return docs
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def _similarity_search_with_relevance_scores(
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self,
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query: str,
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k: int = 4,
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**kwargs: Any,
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) -> List[Tuple[Document, float]]:
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"""Return docs and relevance scores in the range [0, 1].
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0 is dissimilar, 1 is most similar.
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Args:
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query: input text
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k: Number of Documents to return. Defaults to 4.
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**kwargs: kwargs to be passed to similarity search. Should include:
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score_threshold: Optional, a floating point value between 0 to 1 to
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filter the resulting set of retrieved docs
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Returns:
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List of Tuples of (doc, similarity_score)
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"""
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return self.similarity_search_with_score(query, k, **kwargs)
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def similarity_search_with_score_by_vector(
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self,
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embedding: List[float],
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k: int = 4,
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filter: Optional[dict] = None,
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) -> List[Tuple[Document, float]]:
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# Add the filter if provided
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filter_condition = ""
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if filter is not None:
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conditions = [
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f"metadata->>{key!r} = {value!r}" for key, value in filter.items()
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]
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filter_condition = f"WHERE {' AND '.join(conditions)}"
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# Define the base query
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sql_query = f"""
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SELECT *, l2_distance(embedding, :embedding) as distance
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FROM {self.collection_name}
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{filter_condition}
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ORDER BY embedding <-> :embedding
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LIMIT :k
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"""
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# Set up the query parameters
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params = {"embedding": embedding, "k": k}
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# Execute the query and fetch the results
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with self.engine.connect() as conn:
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results: Sequence[Row] = conn.execute(text(sql_query), params).fetchall()
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documents_with_scores = [
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(
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Document(
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page_content=result.document,
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metadata=result.metadata,
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),
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result.distance if self.embedding_function is not None else None,
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)
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for result in results
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]
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return documents_with_scores
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def similarity_search_by_vector(
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self,
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embedding: List[float],
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k: int = 4,
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filter: Optional[dict] = None,
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**kwargs: Any,
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) -> List[Document]:
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"""Return docs most similar to embedding vector.
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Args:
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embedding: Embedding to look up documents similar to.
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k: Number of Documents to return. Defaults to 4.
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filter (Optional[Dict[str, str]]): Filter by metadata. Defaults to None.
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Returns:
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List of Documents most similar to the query vector.
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"""
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docs_and_scores = self.similarity_search_with_score_by_vector(
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embedding=embedding, k=k, filter=filter
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)
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return [doc for doc, _ in docs_and_scores]
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@classmethod
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def from_texts(
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cls: Type[AnalyticDB],
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texts: List[str],
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embedding: Embeddings,
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metadatas: Optional[List[dict]] = None,
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embedding_dimension: int = _LANGCHAIN_DEFAULT_EMBEDDING_DIM,
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collection_name: str = _LANGCHAIN_DEFAULT_COLLECTION_NAME,
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ids: Optional[List[str]] = None,
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pre_delete_collection: bool = False,
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**kwargs: Any,
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) -> AnalyticDB:
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"""
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Return VectorStore initialized from texts and embeddings.
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Postgres connection string is required
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Either pass it as a parameter
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or set the PGVECTOR_CONNECTION_STRING environment variable.
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"""
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connection_string = cls.get_connection_string(kwargs)
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store = cls(
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connection_string=connection_string,
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collection_name=collection_name,
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embedding_function=embedding,
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embedding_dimension=embedding_dimension,
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pre_delete_collection=pre_delete_collection,
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)
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store.add_texts(texts=texts, metadatas=metadatas, ids=ids, **kwargs)
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return store
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@classmethod
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def get_connection_string(cls, kwargs: Dict[str, Any]) -> str:
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connection_string: str = get_from_dict_or_env(
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data=kwargs,
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key="connection_string",
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env_key="PG_CONNECTION_STRING",
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)
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if not connection_string:
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raise ValueError(
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"Postgres connection string is required"
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"Either pass it as a parameter"
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"or set the PGVECTOR_CONNECTION_STRING environment variable."
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)
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return connection_string
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@classmethod
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def from_documents(
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cls: Type[AnalyticDB],
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documents: List[Document],
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embedding: Embeddings,
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embedding_dimension: int = _LANGCHAIN_DEFAULT_EMBEDDING_DIM,
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collection_name: str = _LANGCHAIN_DEFAULT_COLLECTION_NAME,
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ids: Optional[List[str]] = None,
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pre_delete_collection: bool = False,
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**kwargs: Any,
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) -> AnalyticDB:
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"""
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Return VectorStore initialized from documents and embeddings.
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Postgres connection string is required
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Either pass it as a parameter
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or set the PGVECTOR_CONNECTION_STRING environment variable.
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"""
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texts = [d.page_content for d in documents]
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metadatas = [d.metadata for d in documents]
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connection_string = cls.get_connection_string(kwargs)
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kwargs["connection_string"] = connection_string
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return cls.from_texts(
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texts=texts,
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pre_delete_collection=pre_delete_collection,
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embedding=embedding,
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embedding_dimension=embedding_dimension,
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metadatas=metadatas,
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ids=ids,
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collection_name=collection_name,
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**kwargs,
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)
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@classmethod
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def connection_string_from_db_params(
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cls,
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driver: str,
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host: str,
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port: int,
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database: str,
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user: str,
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password: str,
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) -> str:
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"""Return connection string from database parameters."""
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return f"postgresql+{driver}://{user}:{password}@{host}:{port}/{database}"
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