diff --git a/pcsx2/GS/Renderers/DX12/GSDevice12.cpp b/pcsx2/GS/Renderers/DX12/GSDevice12.cpp
index bf8e536ce0..0b7fd51150 100644
--- a/pcsx2/GS/Renderers/DX12/GSDevice12.cpp
+++ b/pcsx2/GS/Renderers/DX12/GSDevice12.cpp
@@ -788,6 +788,7 @@ void GSDevice12::SetVSyncMode(GSVSyncMode mode, bool allow_present_throttle)
 
 	if (GetSwapChainBufferCount() != old_buffer_count)
 	{
+		ExecuteCommandList(true);
 		DestroySwapChain();
 		if (!CreateSwapChain())
 			pxFailRel("Failed to recreate swap chain after vsync change.");