rea/docs/installation.md

Installation and setup

REA separates installing its CLI from configuring external software and agents.

Start setup

Start setup with:

npx rea-agents setup

If npm asks to download and run REA, that approval applies only to downloading the package. REA shows its own plan and asks before changing agent configuration or installing Hopper.

The short command can use a REA version installed in the current project. To request the latest release explicitly, use:

npx rea-agents@latest setup

REA runs the version npm selects. To update older agent registrations, run the latest-version command and review its setup plan. For unattended package downloads, add --yes before the package name; this does not approve REA's setup changes.

For an intentional rollback, make the package request explicit:

npm exec --yes --package=[email protected] -- rea setup

Setup continues to pin persistent MCP registrations to the exact version that performed setup. Running current setup later migrates unversioned or older managed registrations through the normal reviewed setup transaction.

REA supports Node.js 22.x (>=22.19), 24.x (>=24.11), and 26+. Node.js 23, 25, and prereleases are unsupported. It uses the npm already paired with that runtime and never upgrades Node.js, npm, or Homebrew.

Running npm install rea-agents without --global installs the executable only in the current project's node_modules/.bin; it does not make rea available on the shell PATH. Use the setup command above for the guided setup journey, npx -y rea-agents@latest for unattended one-off commands, or install globally with npm install --global rea-agents for a shell-visible rea command.

The optional curl wrapper installs only the global npm package:

curl -fsSL https://raw.githubusercontent.com/morluto/rea/main/install.sh | bash

It prints the version, runtime, npm command, and destination before installing. When a controlling terminal exists it starts rea setup; otherwise it prints the command to run later.

Pass options with bash -s --:

curl -fsSL https://raw.githubusercontent.com/morluto/rea/main/install.sh |
  bash -s -- --dry-run

Supported options are --version <semver>, --dry-run, --no-setup, --no-prompt, and --verbose. Neither --no-prompt nor a non-interactive shell grants permission to install external dependencies.

Released package and main

Repository main documents its current code and generated catalog. @latest selects the npm release, and persistent MCP registrations are pinned to the version that performed setup. Installing newer instructions does not update a running server or its registration.

The release checked on 2026-10-07 was 5.0.0 (133 MCP tools), published from the fixed checkpoint b33236ec. The public CLI, MCP catalog and target-free session, and isolated update from 4.1.0 to 5.0.0 were verified through npm. The artifact includes Windows native controls, Android/JADX and firmware tools, Ghidra function annotations, and retained application-Evidence references.

Main's catalog describes the current code. A source build or a subsequent release containing changes after this checkpoint is required for newer functionality. Package startup alone does not verify a provider's real platform workflow.

To check the published version, run npm view rea-agents dist-tags.latest. Use the connected server's actual tool list and advertised input schemas for feature selection. The same package version string in a development checkout does not establish that its bytes match the npm tarball. Update a registration through a reviewed, scoped setup plan, then restart/reconnect the agent.

Skill-only installation

npx skills add morluto/rea --skill reverse-engineer-anything

This installs agent instructions and bundled references, not REA MCP registration or analysis engines. Follow the skill's conditional connection guide. Working tools can be used immediately. If tools are missing, inspect the current client's registration with doctor --client codex --json (substitute its client ID), then plan repairs with setup --client codex --dry-run --json. Show and approve the exact changes before applying that scope. An aligned registration with tools absent from the active session needs a restart/reconnection; doctor checks files and prerequisites, not the live agent connection.

Guided setup installs the package's matching skill by default. The skills.sh route can select newer repository instructions, so follow actual server schemas and the release boundary above. Static JavaScript CLI inspection can proceed while MCP is unavailable:

npx -y rea-agents@latest analyze-javascript-application /absolute/path/to/app --json

It returns the complete Evidence record directly and requires no native engine. Provider failures in doctor do not prevent unrelated target-free tools. To check readiness for one task instead of auditing every integration, see Check readiness for your task.

Supported agents

Setup can configure these clients for REA's local MCP server. Grok Bot is listed after the table because its connector is not one of these files:

Client	--client value
Claude Code	claude_code
Claude Desktop	claude_desktop
Codex	codex
Cursor	cursor
Gemini CLI	gemini_cli
Windsurf	windsurf
Devin	devin
OpenCode	opencode
Antigravity	antigravity
GitHub Copilot CLI	copilot_cli
Command Code	commandcode
VS Code	vscode
Grok Build	grok_build
OMP	omp

For OMP, setup writes a type: "stdio" entry to the user-level ~/.omp/agent/mcp.json. It follows PI_CONFIG_DIR, an absolute PI_CODING_AGENT_DIR, and the profile selected by OMP_PROFILE or PI_PROFILE (~/.omp/profiles/<name>/agent/mcp.json). Setup also removes rea from that file's disabledServers list, which would otherwise hide the registration. Doctor treats an enabled: false entry as active when enabledServers lists rea, as OMP does, unless disabledServers also lists it. Run setup under each profile that should load REA.

For OpenCode, setup writes the V1 mcp.rea entry, which OpenCode V1 and V2 both load. If the configuration already uses OpenCode V2's native mcp.servers table, setup registers REA there instead and replaces any earlier mcp.rea entry from REA.

Grok Build loads [mcp_servers.rea] from $GROK_HOME/config.toml, or from ~/.grok/config.toml when GROK_HOME is unset. Setup edits that server table, [mcp_servers.rea.env], and a root disabled_mcp_servers entry that names rea. It sets startup_timeout_sec = 30 and leaves every other name in that list. The shared skill installed under ~/.agents/skills is already on Grok Build's skill path.

Grok Bot (grok_bot) is detected from ~/.grokbot, or from SAND_DATA_ROOT when that value is an absolute path. A relative or empty SAND_DATA_ROOT stays on ~/.grokbot. That directory is not the connector store. Grok Bot keeps connectors in the signed-in account and runs them on its hosted computer. It does not import mcp.json from the data directory, and it does not attach a stdio server running on this machine. Setup does not call the account connector API, does not write a registration file, and does not report the data directory as aligned. Ask the Grok Bot chat to add a custom MCP server named rea that runs on the Bot's computer:

npx -y rea-agents@<version> mcp

Do not put credentials in that command or its arguments. rea doctor --client grok_bot reports this manual step. rea uninstall does not remove the account connector.

Review setup changes

rea setup first offers the supported agents in a multi-select. Existing REA registrations are selected by default. Newly detected clients remain available but unselected: detection gives setup context, not permission to add a new registration. Clients without a detected configuration can still be selected. Explicit --client flags skip this question.

Setup adds MCP access for selected clients. It installs REA's bundled workflow with those integrations by default; use --skill=false to omit it. If no agent is selected, setup offers the workflow separately for CLI use, with No as the default. Hopper is a separate optional choice: setup shows its proposed installation or connection and requires its own explicit approval. It can also save verified paths for an existing Ghidra installation.

The bundled skill is installed where each selected client discovers personal skills: Claude Code uses ~/.claude/skills (or $CLAUDE_CONFIG_DIR/skills when configured), while other supported clients use the shared ~/.agents/skills directory. A mixed selection plans both paths. Selecting the skill without a client uses the shared directory. Setup leaves existing skill copies in other locations untouched.

doctor --skill --json verifies the selected copies against the bundled instructions and references. Consumers should use identity.skill.state, installed_version, and installed_tool_count for skill readiness. The obsolete installed_catalog_digest field has been removed; current catalog identity remains available at identity.catalog.

After selection, review the plan's exact paths and changes and approve before REA writes files or installs Hopper. You can cancel at any prompt.

Before applying changes, REA checks your current configuration. The plan lists:

• an existing Hopper installation, a verified existing Ghidra installation, or the official Hopper package it proposes to install;
• each detected agent configuration path;
• each selected REA skill destination;
• external software, network origins, integrity evidence, and package-manager commands.

Malformed or unsafe existing configuration blocks the whole transaction before Hopper installation or any file write. Declining or pressing Ctrl-C makes no changes. Agent configuration writes preserve unrelated entries and comments, create backups, use atomic replacement, and verify their result. Setup and uninstall retain an existing .rea.backup rather than replacing the first snapshot.

After setup, REA reports which agents, analysis tools, and workflow files passed its final checks. Restart any agent named in the completion message, then begin your investigation. Failed steps and diagnostics remain in terminal history.

Select exact clients in scripts with repeatable --client flags. Each explicit client skips interactive selection. Use --all-detected only when you intend to configure every detected supported client. --skill=false omits the workflow, and --dry-run returns a read-only plan with status planned and exit code 0:

rea setup --client codex --client cursor --skill=false --dry-run

Prompt UI and progress are written to stderr so stdout remains available for structured results and pipelines. NO_COLOR=1 disables color. Use --accessible for sequential, vertically rendered yes/no prompts. Implicit interactive setup requires stdin, stdout, and stderr to all be terminals; when any stream is redirected, setup stays non-interactive. Declining or cancelling returns status cancelled with exit code 0.

For automation, rea setup --json reports the plan and a compact .doctor readiness projection without applying it. Use rea doctor --json for full health diagnostics and canonical tool catalog details. Pair --yes with explicit scope such as --client codex, or use --all-detected when the broad scope is intended. Without a scope flag, --yes is limited to existing REA-owned registrations; it does not select all detected clients. An unapproved actual apply reports needs_confirmation and exits 1. Installing missing Hopper non-interactively additionally requires --install-hopper:

rea setup --yes --all-detected --install-hopper --json

Setup pins package-runner MCP registrations to the exact installed REA version, installs the matching skill and on-demand references in the same plan, and adds startup_timeout_sec = 30 for Codex and Grok Build. rea update installs the exact resolved release into the npm prefix that owns the running package, then checks the new executable's version before reporting success. It does not reopen onboarding. Release lookup and installation both use npm's configured registry. Its maintenance plan selects only existing REA registrations and an already installed REA skill. Run the returned scoped setup command to review and approve those changes, then restart affected agents. The plan is returned in terminal, non-TTY, and JSON modes without applying configuration changes.

Check readiness for your task

Run rea doctor when you need diagnosis. It reads host prerequisites and agent configuration without changing them. Without options, it audits every detected registration, the installed skill and optional analysis engines; its overall healthy value can be false while your chosen workflow works.

Select the part you want to check:

Task	Readiness check
Static JavaScript/Electron analysis	Run rea analyze-javascript-application PATH --json directly.
One analysis engine	rea doctor --provider ghidra --json (or hopper, ida)
One agent registration	rea doctor --client codex --json (see client IDs)
Installed workflow instructions	rea doctor --skill --json

A scoped report has scope.mode: "explicit". Its scope_checks determine healthy and the exit status. Other checks appear in informational_checks; environment_healthy summarizes the full audit. --target adds a target check, but the report remains audit-wide unless a scope option is also supplied.

Follow the remediation for the failed check. If a native target has several available providers, choose one with --provider on the CLI or provider_id on open_binary. A capability_unavailable failure carries details.selection_reason: ambiguous asks you to choose from details.candidate_ids, while provider_unavailable asks you to repair the selected engine. See provider selection.

Hopper

Hopper is separate commercial software with its own license. Its free demo has vendor-defined limits, and a paid license is optional. REA reuses any detected installation and preserves Hopper during uninstall.

The supported native host baseline is macOS 12+, Ubuntu 24.04+, Fedora 41+, Nobara 44+, 64-bit Arch Linux, or CachyOS. Ghidra and IDA have their own provider-specific host requirements; Windows Ghidra uses the experimental P0 boundary.

On macOS, approved setup downloads the official DMG, checks its published size and digest, validates the application bundle, and atomically installs it to ~/Applications/Hopper Disassembler.app. REA then opens Hopper so the operator can choose its demo mode or activate an existing license. Homebrew and administrator access are not used.

The Hopper launcher action used by REA creates a document from an executable; its supported command-line interface does not attach to an already-open document. While another live REA session owns the same target and loader profile, a second session reports the owning run ID instead of opening a duplicate document. Closing the owning REA session releases this guard; Hopper keeps its document open. A later REA session can therefore open another document for the same target. REA does not currently identify, focus, or reuse that existing GUI document, and the supported launcher exposes no attach or reuse action for it.

On supported Linux distributions, approved setup verifies Hopper's official .deb, .rpm, or Arch package before invoking the native package manager. REA runs the supported demo build on a private Xvfb display and selects Hopper's offered demo mode for each analysis session; it does not require the user's desktop display. Unattended package-manager access requires --yes --install-hopper. If the host exposes /tmp/.X11-unix as an immutable mount, REA first verifies the conflict and then uses an unprivileged user and mount namespace with a private mode-1777 tmpfs over that directory only. The host mount and the rest of /tmp remain unchanged; this fallback never invokes sudo. rea doctor --provider hopper --json reports the selected strategy and both host and effective mount facts.

The supported Linux demo forwards additional launches into its existing application, even across private displays. REA therefore reserves one Linux Hopper application per user across cooperating REA processes. A competing CLI or MCP session receives the owning session ID before Hopper is launched, for both the same target and a different target. Switch targets through that MCP session, or close it before starting another session. Closing the owner releases the reservation. This does not attach to or claim ownership of manually opened Hopper applications.

Stale lease recovery is serialized. If an interrupted recovery leaves its reservation directory, the diagnostic identifies that exact path. Stop REA sessions before removing that recovery directory and retrying.

Launcher paths and troubleshooting

On macOS, REA uses /Applications/Hopper Disassembler.app/Contents/MacOS/hopper by default. On Linux, it prefers executable /opt/hopper/bin/Hopper, then executable ~/.local/share/rea/hopper/bin/Hopper; if neither exists, the former remains the diagnostic fallback. HOPPER_LAUNCHER_PATH overrides those choices:

export HOPPER_LAUNCHER_PATH=/absolute/path/to/Hopper
rea doctor --provider hopper --json

If a Linux launcher exists but cannot start, inspect its shared libraries:

ldd /absolute/path/to/Hopper | grep 'not found'

Install the missing packages and rerun the scoped check. Linux demo sessions need Xvfb, Python 3, X11 and XTEST; approved setup installs those dependencies on supported distributions. Add the curl installer's reported executable directory, commonly ~/.local/bin, to your shell PATH if needed.

REA starts Hopper when needed. On macOS, its launcher can bring a window or first-run dialog forward; choose demo mode or activate your existing license. Hopper serializes analysis requests. Cancelling a wait can leave provider work running, which the session reports. Successful decompilation is cached until a relevant rename or comment changes it.

Analysis and annotation calls stay bound to the active target's native Hopper document, even when GUI focus changes or other documents have the same display name. Use open_binary to change targets. Byte reads stop at a segment boundary and return the readable prefix with complete: false. File-offset mapping checks the reverse lookup and original executable bounds; synthetic external-symbol memory has no original file offset. For FAT Mach-O, offsets refer to the original container file. Results retain Hopper's image-relative offset, the observed slice base, and the source executable path. Loader selection reads the Mach-O container header, including FAT files with a single architecture. For FAT64, REA validates the architecture table and selected Mach-O header, prepares a private thin image, and loads it with Hopper's native Mach-O loader. It checks the entire source's SHA-256 while copying the slice; source identity and reported offsets still refer to the original container. An ambiguous architecture subtype requires an explicitly extracted thin image; REA does not guess. Configured loader arguments remain explicit overrides. FAT64 is distinct from the CPU architecture: FAT32 containers can contain 64-bit executable images. This preparation avoids the Raw Binary loader dialog observed with native FAT64 loading on Hopper 6.1.0-demo. The prepared image and its owned document close together, including on MCP exit; if document closure is unconfirmed, REA retains the backing image and reports cleanup_incomplete with its path. Ordinary documents retain their existing MCP-exit behavior. Startup deadlines report missing bridge readiness and preserve the launcher outcome; a successful helper exit does not prove that a loader dialog completed. Cursor navigation returns the observed object start when Hopper snaps an interior address; adjacent-object navigation rejects unmapped inputs and document ends. Native API text rejects NUL characters and unpaired Unicode surrogates before annotation changes. Renames preserve unselected label owners; use a batch with all affected addresses to move or swap existing labels explicitly. Every rename destination must be mapped, and native symbol names must fit Hopper's 1024 UTF-16 code-unit limit. Oversized names fail before any batch edits; bookmarks and literal string results are not subject to that symbol-name limit. Rename success requires exact final readback. New bookmarks must point into mapped memory; existing legacy bookmarks outside it can still be removed. String results read each native typed object's complete bytes, retain the original provider display in provider_value, and report its encoding, byte length, and termination. encoding_status: inferred distinguishes REA's decoding from an observed source encoding. Hopper can split long literals into adjacent unterminated objects; search matches each object's decoded bytes independently. Undecodable objects retain native display text with decoding.available: false and a reason, so one uncertain object does not block unrelated inspections. Function dossiers retain this same string evidence. Native call edges retain Hopper's partial CallReference classification and exact endpoints; detailed reference flags remain unavailable rather than being invented. Regex searches use ECMAScript Unicode syntax in a cancellable worker with a five-second matching deadline. Deadline or cancellation stops matching while leaving the Hopper API available. Literal mode retains Unicode casefold matching.

Closing or switching a target closes its bound Hopper document, shuts down REA's bridge and removes its temporary socket directory while preserving the Hopper application and unrelated documents. A cleanup_incomplete result identifies resources whose cleanup could not be verified. REA retains unresolved cleanup ownership and any confirmed shutdown phases. After addressing the reported failure, retry close_binary on the same connection. Unconfirmed document or process cleanup retains the target/application lease and prevents another client from launching against that owned resource. Once document and process closure are confirmed, the lease can be released even if temporary-file cleanup fails. Another client can then launch, but the owning client must finish its retained cleanup before starting again. An unconfirmed external document can be retried while its authenticated bridge remains connected. If that bridge has disconnected, another close cannot confirm the document: inspect and close the reported document in Hopper before ending the owning REA connection.

Hopper in CI

REA's unattended Linux path is validated against Hopper's offered demo mode. A paid license is not required for that path, and REA does not read, install, or automate license credentials. Licensed Hopper installations remain supported, but license activation is an operator-owned prerequisite rather than part of REA setup.

macOS requires Hopper's first-run UI to be completed in the same user session that will run REA: choose the demo mode or activate an existing license before starting an unattended job. Ephemeral macOS runners therefore need a pre-provisioned user session or a deliberate interactive bootstrap step.

When Hopper cannot start in CI, run rea doctor --provider hopper --json in the failing runner. Structured failures distinguish private-display dependencies, an unsupported demo dialog or build, process-ownership conflicts, and an early lifecycle exit. Apply the reported remediation rather than exposing the runner's desktop, copying license secrets into logs, or killing unrelated Hopper processes.

Ghidra

REA connects to an existing Ghidra installation on Linux x64/arm64, macOS x64/arm64, or experimental Windows x64 P0. It accepts Ghidra 12.1.x and the 64-bit full JDK declared by that installation's application.java.min and application.java.max. Current 12.1 releases require JDK 21 or newer and set no maximum. The bridge is verified with Ghidra 12.1.4 and JDK 21. Each installation must include the native decompiler for the host architecture in Ghidra/Features/Decompiler/os/<platform>/ or the corresponding build/os/<platform>/ directory. Linux ARM64 uses linux_arm_64; official release archives may require you to build that native component separately. REA checks the executable prerequisite and does not build or install native tools, or change Gatekeeper quarantine settings.

The adapter exposes 25 read-only operations: thirteen inventory/name/search operations and twelve function-analysis operations. These cover metadata, decompilation, assembly, resolved calls, typed references, xrefs, function dossiers, instructions, recovered data types, measured load mappings, loaded memory bytes, and observed file offsets. Independent load-image attestation supports DOS MZ and explicitly selected COM; PE returns its measurements with that limitation. On Linux and macOS, annotate_native_function also edits a function name and/or entry comments atomically and returns refreshed analysis. These session metadata edits leave executable bytes unchanged and are discarded on close. GUI controls require Hopper; Windows P0 remains read-only.

Windows P0 admits native x86 and x86-64 PE applications on fixed local NTFS volumes. The npm package bundles native Job Object ownership, protected private runtime DACLs, and handle-based path admission; no separate addon installation is needed. See the Windows Ghidra P0 guide for verified scope and limitations.

Extract Ghidra and install the JDK outside REA, then export absolute paths:

export GHIDRA_INSTALL_DIR=/absolute/path/to/ghidra_12.1.4_PUBLIC
export JAVA_HOME=/absolute/path/to/jdk-21 # optional if java/javac are on PATH
rea doctor --json
rea setup

On Windows, configure the existing installation in PowerShell:

$env:GHIDRA_INSTALL_DIR = "C:\tools\ghidra_12.1.4_PUBLIC"
$env:JAVA_HOME = "C:\Program Files\Java\jdk-21"
rea doctor --json
rea providers --json

rea setup can configure supported Windows agents and install the bundled REA skill after approval. Direct registrations use Node to launch REA's entry script; package-runner registrations use the pinned npx command. Hopper installation remains unavailable on Windows. Setup never installs Ghidra, Java, or Python. It preserves valid detected Ghidra/JDK settings in agent registrations. See Windows Ghidra P0 for provider diagnostics.

Doctor validates the platform, architecture, Ghidra 12.1.x application version, support/analyzeHeadless or support/analyzeHeadless.bat, the installation's Java major range, 64-bit JDK bitness, and the presence of javac/javac.exe. When Java is found through PATH, setup records its observed JDK home so GUI MCP clients do not depend on an incidental shell path. Setup shows every exact environment entry in its plan, writes only after approval, and never downloads, installs, upgrades, or modifies Ghidra or Java.

Each verified session uses an ephemeral temporary project and isolated home/cache/config/temp paths. REA passes -readOnly, -deleteProject, uses Ghidra's default analysis settings, and loads its packaged Java bridge via -scriptPath; it never opens an existing user project. Linux and macOS use a current-user-only local bridge socket and descriptor. The project remains under the selected temporary directory. If its Unix socket pathname would exceed the host's byte limit, REA allocates a separate mode-0700 socket directory under /tmp and removes it on close, cancellation, or failure. Diagnostics retain the actual endpoint and both owned directories. On Linux and macOS, REA starts the inspected JVM directly using Ghidra's own LaunchSupport configuration. Apple platform shell wrappers hide their environments from ownership inspection, so retaining those wrappers would prevent verified process-group cancellation during startup. If ownership remains unverifiable, it reports the reason and retains the process supervisor and private runtime instead of removing files beneath a live provider. The experimental Windows transport uses authenticated IPv4 loopback with a private native-owned bearer descriptor and Job Object process ownership.

Operations begin only after default auto-analysis completes. open_binary selects and validates the target/provider binding; it does not wait for Ghidra import and auto-analysis. The first Ghidra-backed query starts that work lazily. The provider startup deadline is 330,000 ms by default for import, analysis, bridge, and health readiness. Large binaries can need more: set REA_GHIDRA_STARTUP_TIMEOUT_MS to an integer between 1 and 2,147,483,647 milliseconds in the server environment. An absent setting uses the default; empty, invalid or out-of-range supplied values fail configuration validation. REA parses the supplied configuration environment and passes the deadline to each provider client; a startup failure is returned by the query that triggered it, without exposing partial analysis. This deadline is separate from MCP transport initialization and the client's deadline for that individual tool call. A client can time out earlier even when Ghidra would complete within its startup deadline. See Ghidra first-query deadlines and recovery for client options and the close/reopen recovery flow.

One session contains exactly one imported Program; use provider_id: "ghidra", --provider ghidra, or REA_ANALYSIS_PROVIDER=ghidra when both Hopper and Ghidra support the target. One persistent decompiler is owned by the Program, and a serial queue keeps Ghidra API calls on the owning Program thread without a fixed queue length. Operations run until a result, caller cancellation, or provider shutdown; there is no fixed per-operation or response-size ceiling. Unresolved computed calls remain unknown, reference-kind provenance is preserved, and provider-specific pseudocode is never treated as original source or Hopper-equivalent text.

Ghidra heap and CPU controls

Set resource controls in the environment that launches the CLI or MCP server, before opening a new Ghidra session. On Linux and macOS, REA chooses the first nonempty setting in this order: GHIDRA_HEADLESS_MAXMEM, GHIDRA_MAXMEM, then 2G. The chosen value becomes the JVM's -Xmx argument. Use a JVM heap-size value such as 512M or 2G; an invalid value causes Java startup to fail. The supported Ghidra 12.1.4 Windows headless script consumes the same settings with the same precedence.

For a small target on a constrained host:

export GHIDRA_HEADLESS_MAXMEM=512M

In PowerShell:

$env:GHIDRA_HEADLESS_MAXMEM = "512M"

An MCP client must pass this setting to its REA server process; changing an unrelated terminal's environment does not reconfigure an existing server or JVM. A 512 MiB heap was verified with small native fixtures, but larger targets can require more memory. The Java heap limit does not bound JVM RSS, Node's heap, or total memory used by the process family. The startup deadline controls waiting time independently of these memory settings.

REA clears _JAVA_OPTIONS, JAVA_TOOL_OPTIONS, JDK_JAVA_OPTIONS, and GHIDRA_JAVA_OPTIONS inherited from the caller, and owns GHIDRA_HEADLESS_JAVA_OPTIONS. Custom flags injected through these variables are not supported configuration. On Windows, REA replaces JDK_JAVA_OPTIONS with its own isolated home/temp settings and -XX:-UsePerfData; on Linux and macOS it supplies isolated paths directly to Java. Use the supported heap settings above instead of adding a second -Xmx through an injection variable.

The Linux/macOS launch sets -XX:ParallelGCThreads=2 and -XX:CICompilerCount=2; the supported Windows headless script also sets these counts. These constrain particular JVM thread pools, not all analysis threads or CPU usage. REA does not pass Ghidra's -max-cpu option or expose a general Ghidra CPU limit. When needed, apply host CPU affinity and scheduling controls to the REA process and verify the resulting JVM's affinity. Select CPUs allowed on the host; do not assume CPU numbers from another machine are valid.

Verify controls at their consumer after the first Ghidra-backed query starts the JVM: inspect that owned JVM's effective -Xmx and GC/compiler flags, CPU affinity, and observed memory use. Do not infer them from the parent shell's environment or the absence of an error. On Linux, /proc/<jvm-pid>/cmdline contains the launch arguments and /proc/<jvm-pid>/status reports Cpus_allowed_list and VmRSS. Inspect only the process belonging to this session and retain the resource flags needed for the measurement rather than copying full command lines or environments into reports. Heap and affinity settings affect cost and latency; they are not part of REA's semantic analysis profile identity. See real-provider testing for bounded verification workflows.

Ghidra diagnostics and verification

Unexpected request failures retain their original internal cause. CLI and MCP errors expose Error names, messages, and available codes under details.diagnostics.failure_cause; other rejection values retain their primitive value or an explicit type. Shutdown warnings include the failure kind, message, and diagnostics, while process and temporary-project cleanup continues. These messages redact known bridge authentication tokens and preserve local paths and other analysis context.

Run GHIDRA_INSTALL_DIR=... npm run verify:ghidra from a source checkout to compile and analyze debug and stripped host-native fixtures (ELF on Linux x64/arm64 or Mach-O on macOS), plus a native DWARF 4 type-layout object. This lane needs a host C compiler in addition to Ghidra and its JDK.

Run GHIDRA_INSTALL_DIR=... npm run verify:ghidra:cross-format to add AArch64 ELF, x86-64 PE, and x86-64 Mach-O fixture coverage. This separate lane needs clang, LLD, and lld-link on PATH; REA_CLANG and REA_LLD_LINK select alternate command paths. Missing cross-target tooling does not block the host-native Ghidra acceptance lane.

On a controlled Windows x64 runner, use npm run verify:ghidra:windows. The verifier generates a deterministic native PE fixture from source bytes and requires the Windows native authority before opening the provider. The controls are implemented on main; see the release boundary. The lane verifies all 25 admitted read-only operations, digest identity, and runtime cleanup. The separate verify:ghidra:windows:package lane checks the packed CLI/MCP boundary with an ordinary user. It requires the built Windows native bundle and an existing Ghidra/JDK installation; neither is inferred from startup alone.

Diagnose, update, and remove

rea doctor --json is strictly read-only. rea update updates only the npm installation that owns the running CLI. Source checkouts and package-runner copies must be updated through the mechanism that owns them; a fresh package-runner invocation can use npx rea-agents@latest. rea uninstall removes only REA-owned agent registrations and skill files; --purge-data additionally removes REA cache and state paths.

rea update
rea uninstall
rea uninstall --purge-data

Uninstall preserves Hopper, Node.js, Evidence files, captures, unrelated skills and other MCP servers. Purging removes only REA's cache and state under ~/.rea. A client configuration that is malformed, unreadable, or at an unsafe path stops the operation before anything is removed, and a client that fails while being updated stops the remaining removals. A purge path that is a symbolic link is retained and reported rather than followed. Uninstall checks REA's managed shared and Claude Code personal skill locations. See the CLI guide for exit statuses.

MCP Registry

REA is published in the official MCP Registry as io.github.morluto/rea. Registry clients can discover the server and install the existing public rea-agents npm package; the Registry entry does not introduce a second distribution artifact.

For a client that supports Registry discovery, search for io.github.morluto/rea and select the npm package. The published metadata launches the existing stdio server through npx with the mcp command.

For a client that requires manual configuration, use:

{
  "mcpServers": {
    "rea": {
      "command": "npx",
      "args": ["-y", "[email protected]", "mcp"]
    }
  }
}

Persistent registrations should use one exact package version. rea setup writes the same package-runner shape and pins it to the exact version that performed setup. Run current setup to refresh an older registration, then restart the client.